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Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Identifieur interne : 00E306 ( Main/Exploration ); précédent : 00E305; suivant : 00E307

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Auteurs : Kirsten I. Bos [Allemagne] ; Alexander Herbig [Allemagne] ; Jason Sahl [États-Unis] ; Nicholas Waglechner [Canada] ; Mathieu Fourment [Australie] ; Stephen A. Forrest [Allemagne] ; Jennifer Klunk [Canada] ; Verena J. Schuenemann [Allemagne] ; Debi Poinar [Canada] ; Melanie Kuch [Canada] ; G Brian Golding [Canada] ; Olivier Dutour [France] ; Paul Keim [États-Unis] ; David M. Wagner [États-Unis] ; Edward C. Holmes [Australie] ; Johannes Krause [Allemagne] ; Hendrik N. Poinar [Canada]

Source :

RBID : PMC:4798955

Descripteurs français

English descriptors

Abstract

The 14th–18th century pandemic of Yersinia pestis caused devastating disease outbreaks in Europe for almost 400 years. The reasons for plague’s persistence and abrupt disappearance in Europe are poorly understood, but could have been due to either the presence of now-extinct plague foci in Europe itself, or successive disease introductions from other locations. Here we present five Y. pestis genomes from one of the last European outbreaks of plague, from 1722 in Marseille, France. The lineage identified has not been found in any extant Y. pestis foci sampled to date, and has its ancestry in strains obtained from victims of the 14th century Black Death. These data suggest the existence of a previously uncharacterized historical plague focus that persisted for at least three centuries. We propose that this disease source may have been responsible for the many resurgences of plague in Europe following the Black Death.

DOI:http://dx.doi.org/10.7554/eLife.12994.001


Url:
DOI: 10.7554/eLife.12994
PubMed: 26795402
PubMed Central: 4798955


Affiliations:


Links toward previous steps (curation, corpus...)


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,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff11">
<institution content-type="dept">School of Life and Environmental Sciences</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff12">
<institution content-type="dept">Sydney Medical School</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Forrest, Stephen A" sort="Forrest, Stephen A" uniqKey="Forrest S" first="Stephen A" last="Forrest">Stephen A. Forrest</name>
<affiliation wicri:level="1">
<nlm:aff id="aff1">
<institution content-type="dept">Department of Archeological Sciences</institution>
,
<institution>University of Tübingen</institution>
,
<addr-line>Tübingen</addr-line>
,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Klunk, Jennifer" sort="Klunk, Jennifer" uniqKey="Klunk J" first="Jennifer" last="Klunk">Jennifer Klunk</name>
<affiliation wicri:level="1">
<nlm:aff id="aff6">
<institution content-type="dept">McMaster Ancient DNA Centre, Department of Anthropology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff7">
<institution content-type="dept">Department of Biology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Schuenemann, Verena J" sort="Schuenemann, Verena J" uniqKey="Schuenemann V" first="Verena J" last="Schuenemann">Verena J. Schuenemann</name>
<affiliation wicri:level="1">
<nlm:aff id="aff1">
<institution content-type="dept">Department of Archeological Sciences</institution>
,
<institution>University of Tübingen</institution>
,
<addr-line>Tübingen</addr-line>
,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Poinar, Debi" sort="Poinar, Debi" uniqKey="Poinar D" first="Debi" last="Poinar">Debi Poinar</name>
<affiliation wicri:level="1">
<nlm:aff id="aff6">
<institution content-type="dept">McMaster Ancient DNA Centre, Department of Anthropology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Kuch, Melanie" sort="Kuch, Melanie" uniqKey="Kuch M" first="Melanie" last="Kuch">Melanie Kuch</name>
<affiliation wicri:level="1">
<nlm:aff id="aff6">
<institution content-type="dept">McMaster Ancient DNA Centre, Department of Anthropology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Golding, G Brian" sort="Golding, G Brian" uniqKey="Golding G" first="G Brian" last="Golding">G Brian Golding</name>
<affiliation wicri:level="1">
<nlm:aff id="aff7">
<institution content-type="dept">Department of Biology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Dutour, Olivier" sort="Dutour, Olivier" uniqKey="Dutour O" first="Olivier" last="Dutour">Olivier Dutour</name>
<affiliation wicri:level="1">
<nlm:aff id="aff8">
<institution content-type="dept">Laboratoire d'anthropologie biologique Paul Broca, Ecole Pratique des Hautes Etudes, PACEA</institution>
,
<institution>Université Bordeaux</institution>
,
<addr-line>Bordeaux</addr-line>
,
<country>France</country>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Keim, Paul" sort="Keim, Paul" uniqKey="Keim P" first="Paul" last="Keim">Paul Keim</name>
<affiliation wicri:level="1">
<nlm:aff id="aff3">
<institution content-type="dept">Center for Microbial Genetics and Genomics</institution>
,
<institution>Northern Arizona University</institution>
,
<addr-line>Flagstaff</addr-line>
,
<country>United States</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Wagner, David M" sort="Wagner, David M" uniqKey="Wagner D" first="David M" last="Wagner">David M. Wagner</name>
<affiliation wicri:level="1">
<nlm:aff id="aff3">
<institution content-type="dept">Center for Microbial Genetics and Genomics</institution>
,
<institution>Northern Arizona University</institution>
,
<addr-line>Flagstaff</addr-line>
,
<country>United States</country>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name>
<affiliation wicri:level="1">
<nlm:aff id="aff5">
<institution content-type="dept">Marie Bashir Institute for Infectious Diseases and Biosecurity</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff10">
<institution content-type="dept">Charles Perkins Centre</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff11">
<institution content-type="dept">School of Life and Environmental Sciences</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff12">
<institution content-type="dept">Sydney Medical School</institution>
,
<institution>The University of Sydney</institution>
,
<addr-line>Sydney</addr-line>
,
<country>Australia</country>
</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Krause, Johannes" sort="Krause, Johannes" uniqKey="Krause J" first="Johannes" last="Krause">Johannes Krause</name>
<affiliation wicri:level="1">
<nlm:aff id="aff1">
<institution content-type="dept">Department of Archeological Sciences</institution>
,
<institution>University of Tübingen</institution>
,
<addr-line>Tübingen</addr-line>
,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff2">
<institution>Max Planck Institute for the Science of Human History</institution>
,
<addr-line>Jena</addr-line>
,
<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Poinar, Hendrik N" sort="Poinar, Hendrik N" uniqKey="Poinar H" first="Hendrik N" last="Poinar">Hendrik N. Poinar</name>
<affiliation wicri:level="1">
<nlm:aff id="aff4">
<institution content-type="dept">Michael G. DeGroote Institute for Infectious Disease Research</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff6">
<institution content-type="dept">McMaster Ancient DNA Centre, Department of Anthropology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff7">
<institution content-type="dept">Department of Biology</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff9">
<institution content-type="dept">Department of Biochemistry</institution>
,
<institution>McMaster University</institution>
,
<addr-line>Hamilton</addr-line>
,
<country>Canada</country>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">eLife</title>
<idno type="eISSN">2050-084X</idno>
<imprint>
<date when="????">????</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Europe (epidemiology)</term>
<term>Genome, Bacterial</term>
<term>Genotype</term>
<term>History, 15th Century</term>
<term>History, 16th Century</term>
<term>History, 17th Century</term>
<term>History, 18th Century</term>
<term>Molecular Epidemiology</term>
<term>Plague (epidemiology)</term>
<term>Plague (history)</term>
<term>Yersinia pestis (classification)</term>
<term>Yersinia pestis (genetics)</term>
<term>Yersinia pestis (isolation & purification)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Europe (épidémiologie)</term>
<term>Génome bactérien</term>
<term>Génotype</term>
<term>Histoire du 15ème siècle</term>
<term>Histoire du 16ème siècle</term>
<term>Histoire du 17ème siècle</term>
<term>Histoire du 18ème siècle</term>
<term>Peste (histoire)</term>
<term>Peste (épidémiologie)</term>
<term>Yersinia pestis ()</term>
<term>Yersinia pestis (génétique)</term>
<term>Yersinia pestis (isolement et purification)</term>
<term>Épidémiologie moléculaire</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Yersinia pestis</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Europe</term>
<term>Plague</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Yersinia pestis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Yersinia pestis</term>
</keywords>
<keywords scheme="MESH" qualifier="histoire" xml:lang="fr">
<term>Peste</term>
</keywords>
<keywords scheme="MESH" qualifier="history" xml:lang="en">
<term>Plague</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Yersinia pestis</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Yersinia pestis</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Europe</term>
<term>Peste</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Genome, Bacterial</term>
<term>Genotype</term>
<term>History, 15th Century</term>
<term>History, 16th Century</term>
<term>History, 17th Century</term>
<term>History, 18th Century</term>
<term>Molecular Epidemiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Génome bactérien</term>
<term>Génotype</term>
<term>Histoire du 15ème siècle</term>
<term>Histoire du 16ème siècle</term>
<term>Histoire du 17ème siècle</term>
<term>Histoire du 18ème siècle</term>
<term>Yersinia pestis</term>
<term>Épidémiologie moléculaire</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>The 14th–18th century pandemic of
<italic>Yersinia pestis</italic>
caused devastating disease outbreaks in Europe for almost 400 years. The reasons for plague’s persistence and abrupt disappearance in Europe are poorly understood, but could have been due to either the presence of now-extinct plague foci in Europe itself, or successive disease introductions from other locations. Here we present five
<italic>Y. pestis</italic>
genomes from one of the last European outbreaks of plague, from 1722 in Marseille, France. The lineage identified has not been found in any extant
<italic>Y. pestis</italic>
foci sampled to date, and has its ancestry in strains obtained from victims of the 14th century Black Death. These data suggest the existence of a previously uncharacterized historical plague focus that persisted for at least three centuries. We propose that this disease source may have been responsible for the many resurgences of plague in Europe following the Black Death.</p>
<p>
<bold>DOI:</bold>
<ext-link ext-link-type="doi" xlink:href="10.7554/eLife.12994.001">http://dx.doi.org/10.7554/eLife.12994.001</ext-link>
</p>
</div>
</front>
<back>
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<name sortKey="Busso, P" uniqKey="Busso P">P Busso</name>
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<name sortKey="Nebel, A" uniqKey="Nebel A">A Nebel</name>
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<author>
<name sortKey="Boldsen, Jl" uniqKey="Boldsen J">JL Boldsen</name>
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</author>
<author>
<name sortKey="Wu, H" uniqKey="Wu H">H Wu</name>
</author>
<author>
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<author>
<name sortKey="Taylor, Gm" uniqKey="Taylor G">GM Taylor</name>
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<author>
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<author>
<name sortKey="Lee, Oy" uniqKey="Lee O">OY Lee</name>
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<author>
<name sortKey="Wu, Hh" uniqKey="Wu H">HH Wu</name>
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<author>
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<author>
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<name sortKey="Roumagnac, P" uniqKey="Roumagnac P">P Roumagnac</name>
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<name sortKey="Nera, R" uniqKey="Nera R">R Nera</name>
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<name sortKey="Ravel, J" uniqKey="Ravel J">J Ravel</name>
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<name sortKey="Rasoamanana, Bw" uniqKey="Rasoamanana B">BW Rasoamanana</name>
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<author>
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<author>
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<name sortKey="Earn, Djd" uniqKey="Earn D">DJD Earn</name>
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<name sortKey="Rouillard, J M" uniqKey="Rouillard J">J-M Rouillard</name>
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<name sortKey="Bliska, Jb" uniqKey="Bliska J">JB Bliska</name>
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